300bcb86a8
- compatibility with lrcalc 2.1 (trac #31355) - fix doctests for ipython-8.1 (trac #33170) - fix doctests for scipy-1.8 (trac #33336) - fix doctests for sympy-1.10 (trac #33398) - fix doctests when sphinx is installed (trac #33585) - use new package threejs-sage for 3d plots
131 lines
4.8 KiB
Bash
131 lines
4.8 KiB
Bash
# Template file for 'sagemath'
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pkgname=sagemath
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version=9.5
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revision=2
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wrksrc=sage-$version
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build_wrksrc=pkgs/sagemath-standard
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build_style=python3-module
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_bindir=/usr/lib/sagemath/bin
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make_install_args="--install-scripts=$_bindir"
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hostmakedepends="m4 pkg-config python3-Cython python3-Jinja2 python3-pkgconfig
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python3-setuptools"
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makedepends="arb-devel boost-devel brial-devel cliquer-devel ecl eclib-devel
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ecm-devel fflas-ffpack flintlib-devel gap-devel gd-devel giac-devel glpk-devel
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gsl-devel iml-devel lcalc-devel libbraiding-devel libhomfly-devel libmpc-devel
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libpng-devel linbox-devel m4ri-devel m4rie-devel mpfi-devel
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mpfr-devel ntl-devel openblas-devel pari-devel planarity-devel python3-cypari2
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python3-cysignals python3-devel python3-gmpy2 python3-memory_allocator
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python3-numpy rankwidth-devel singular symmetrica-devel zn_poly"
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depends="FlintQS eclib-devel fflas-ffpack flintlib-devel gcc-fortran gd-devel
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gfan giac gsl-devel gzip libpng-devel linbox-devel m4ri-devel maxima-ecl
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mpfr-devel nauty ntl-devel palp pari-devel pari-elldata-small pari-galdata
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pari-galpol-small pari-seadata-small pkg-config python3-Cython python3-cypari2
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python3-cysignals python3-devel python3-fpylll python3-ipython python3-lrcalc
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python3-ipython_ipykernel python3-jupyter_ipywidgets python3-matplotlib
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python3-memory_allocator python3-networkx python3-pip python3-pkgconfig
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python3-pplpy python3-primecountpy python3-requests python3-scipy
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python3-sympy python3-traitlets sage-data-combinatorial_designs
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sage-data-conway_polynomials sage-data-elliptic_curves sage-data-graphs
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sage-data-polytopes_db sympow tachyon threejs-sage"
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checkdepends="$depends"
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short_desc="Open source mathematics software"
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maintainer="Gonzalo Tornaría <tornaria@cmat.edu.uy>"
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license="GPL-2.0-or-later"
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homepage="http://sagemath.org/"
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distfiles="https://github.com/sagemath/sage/archive/refs/tags/$version.tar.gz"
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checksum=8d70a3b26080802c5b2e33dda4c23795d494d8216a0c2ecfcd608ebab0e64ff6
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post_patch() {
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# these are unused and nothing else uses ratpoints
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rm sage/libs/ratpoints.{pyx,pxd}
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# git tree needs bootstrapping
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pushd $wrksrc/build/pkgs/sagelib
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PATH=../../bin:$PATH BOOTSTRAP_QUIET=no ./bootstrap
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popd
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}
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do_configure() {
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# set variables in sage.env since we do not install sage_conf
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cat >> sage/env.py <<-EOF
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CONWAY_POLYNOMIALS_DATA_DIR = "/usr/share/sagemath/conway_polynomials"
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GRAPHS_DATA_DIR = "/usr/share/sagemath/graphs"
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ELLCURVE_DATA_DIR = "/usr/share/sagemath/ellcurves"
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POLYTOPE_DATA_DIR = "/usr/share/sagemath/reflexive_polytopes"
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COMBINATORIAL_DESIGN_DATA_DIR = "/usr/share/sagemath/combinatorial_designs"
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CREMONA_MINI_DATA_DIR = "/usr/share/sagemath/cremona"
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CREMONA_LARGE_DATA_DIR = "/usr/share/sagemath/cremona"
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THREEJS_DIR = "/usr/share/sagemath/threejs-sage"
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EOF
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# don't install sage-venv-config: it is used to set SAGE_VENV=/usr and
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# then sage-env prepends "$SAGE_VENV/bin" to PATH which is undesired
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vsed -e '/sage-venv-config/d' -i $wrksrc/src/setup.cfg
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}
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pre_build() {
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export PYTHONPATH=../sage-setup
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export SAGE_NUM_THREADS="$XBPS_MAKEJOBS"
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}
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post_build() {
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_scripts=$(cd build/scripts* && pwd)
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cat >> $_scripts/sage-env-config <<-'EOF'
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PATH=$(dirname $SELF):$PATH
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EOF
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}
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pre_install() {
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export PYTHONPATH=../sage-setup
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export SAGE_NUM_THREADS="$XBPS_MAKEJOBS"
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}
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post_install() {
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# fix jupyter kernel spec
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vsed -i -e 's|"/usr/bin/sage", "--python"|"/usr/bin/python"|' \
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${DESTDIR}/usr/share/jupyter/kernels/sagemath/kernel.json
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# replace broken symlinks by good copies (sagemath logo images)
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for file in $(ls sage/ext_data/notebook-ipython); do
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rm ${DESTDIR}/usr/share/jupyter/kernels/sagemath/$file
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cp -a sage/ext_data/notebook-ipython/$file \
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${DESTDIR}/usr/share/jupyter/kernels/sagemath
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done
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# we don't have docs here
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rm ${DESTDIR}/usr/share/jupyter/kernels/sagemath/doc
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# we don't have threejs in void
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rm ${DESTDIR}/usr/share/jupyter/nbextensions/threejs-sage
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# symlink main binary
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vmkdir usr/bin
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ln -s $_bindir/sage ${DESTDIR}/usr/bin/sage-${version}
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ln -s sage-${version} ${DESTDIR}/usr/bin/sage
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}
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do_check() {
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_scripts=$(cd build/scripts* && pwd)
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export PYTHONPATH=$(cd build/lib* && pwd)
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# get out of $build_wrksrc, otherwise python picks the wrong sage module
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cd $(mktemp -dp build)
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if [ -f ${XBPS_DISTDIR}/sagemath-check ] ; then
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_sed='s|#.*||;/^\s*$/d;s|[^ ]*/sage/|'$PYTHONPATH'/sage/|g' \
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_test_files=$(sed -e "$_sed" ${XBPS_DISTDIR}/sagemath-check)
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fi
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if [ -z "$_test_files" ]; then
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_test_files=--all
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fi
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cp ${FILESDIR}/timings2.json .
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_test_args="--stats_path=timings2.json"
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if [ "$XBPS_CHECK_PKGS" = full ]; then
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_test_args+=" --long --warn-long 60.0"
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else
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_test_args+=" --warn-long 30.0"
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fi
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if [ "$XBPS_BUILD_ENVIRONMENT" = "void-packages-ci" ]; then
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# for CI use a predictable random seed
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_test_args+=" --random-seed=0"
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fi
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$_scripts/sage -tp ${XBPS_MAKEJOBS} ${_test_args} ${_test_files}
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}
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