New package: gfan-0.6.2
Uses three patches taken from sagemath, cf https://git.sagemath.org/sage.git/plain/build/pkgs/gfan/patches?h=9.5.beta7 - fix location of cddlib include files - normalize the output of one failing test - make tests return an error so build aborts Also fixes for 32 bit bugs catched by testsuite: - add `-ffloat-store` to CFLAGS to fix `0009RenderStairCase` - patch typedef for `int64` which causes hang in `0602ResultantFanProjection`
This commit is contained in:
Gonzalo Tornaría
Leah Neukirchen
parent
95215facf5
commit
290d0ac224
6 changed files with 350 additions and 0 deletions
18
srcpkgs/gfan/patches/fix-int64-for-32bit-archs.patch
Normal file
18
srcpkgs/gfan/patches/fix-int64-for-32bit-archs.patch
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@ -0,0 +1,18 @@
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patch typedef for `int64` which causes hang in `0602ResultantFanProjection`
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cf:
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https://github.com/void-linux/void-packages/pull/34182
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https://trac.sagemath.org/ticket/32088
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https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=905300
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--- a/src/vektor.h 2017-06-20 11:47:37.000000000 -0300
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+++ b/src/vektor.h 2021-11-21 18:28:43.384750825 -0300
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@@ -10,7 +10,7 @@
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using namespace std;
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-typedef signed long int int64;
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+typedef int64_t int64;
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void outOfRange(int i, int n);
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27
srcpkgs/gfan/patches/maketestsreturnerror.patch
Normal file
27
srcpkgs/gfan/patches/maketestsreturnerror.patch
Normal file
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@ -0,0 +1,27 @@
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diff --git a/src/app_test.cpp b/src/app_test.cpp
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index 755bfe6..183c735 100644
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--- a/src/app_test.cpp
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+++ b/src/app_test.cpp
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@@ -562,6 +562,9 @@ int testIntegers()
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failed.push_back(i->folder);
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}
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cout<<"\n";
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+ cout<<"Number of succesful tests "<<good<<endl;
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+ cout<<"Number of failed tests "<<bad<<endl;
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+
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if(!failed.empty())
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{
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cout<<"Failed tests:\n-------------\n";
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@@ -569,11 +572,9 @@ int testIntegers()
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{
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cout<<*i<<" FAILED!\n";
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}
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+ return 1;
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}
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- cout<<"Number of succesful tests "<<good<<endl;
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- cout<<"Number of failed tests "<<bad<<endl;
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-
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return 0;
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}
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};
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71
srcpkgs/gfan/patches/new-cddlib-header-location.patch
Normal file
71
srcpkgs/gfan/patches/new-cddlib-header-location.patch
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@ -0,0 +1,71 @@
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diff --git a/doc/installation.tex b/doc/installation.tex
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index 763f147..61c87be 100644
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--- a/doc/installation.tex
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+++ b/doc/installation.tex
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@@ -20,7 +20,7 @@ Should this command fail, then you are using an old version of gfan.
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As an alternative to using package managers as above you can try to locate an executable file named ``gfan'' in the installation of other math software. SageMath, for example, contains a gfan executable. You also have the possibility of installing a precompiled executables: go to the Gfan webpage, go to the binaries.html subpage, and follow the instructions there. There is however only very few executables available.
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%% Rewrite this section.
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-%% The apt-get linux trouble disappears if all includes of cdd files are of form ``cdd/set\_oper.h''. Now of course if we cannot run apt-get because we are not root we need to install cddlib manually. Here we should use configure to specify how that is done correctly. We should use --prefix=, --includedir=, and possibly --libdir=.
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+%% The apt-get linux trouble disappears if all includes of cdd files are of form ``cddlib/set\_oper.h''. Now of course if we cannot run apt-get because we are not root we need to install cddlib manually. Here we should use configure to specify how that is done correctly. We should use --prefix=, --includedir=, and possibly --libdir=.
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%% The same thing goes for gmp???? EXCEPT THAT FOR SOME REASON gmp is allowed to be in /usr/include .
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diff --git a/src/app_librarytest.cpp b/src/app_librarytest.cpp
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index 3b1395b..d91a264 100644
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--- a/src/app_librarytest.cpp
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+++ b/src/app_librarytest.cpp
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@@ -12,8 +12,8 @@
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#include "setoper.h"
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#include "cdd.h"
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#else
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-#include "cdd/setoper.h"
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-#include "cdd/cdd.h"
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+#include "cddlib/setoper.h"
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+#include "cddlib/cdd.h"
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#endif
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#include <iostream>
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#include <fstream>
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diff --git a/src/gfanlib_zcone.cpp b/src/gfanlib_zcone.cpp
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index f24f09c..481f116 100644
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--- a/src/gfanlib_zcone.cpp
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+++ b/src/gfanlib_zcone.cpp
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@@ -16,8 +16,8 @@
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#include "setoper.h"
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#include "cdd.h"
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#else
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-#include "cdd/setoper.h"
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-#include "cdd/cdd.h"
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+#include "cddlib/setoper.h"
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+#include "cddlib/cdd.h"
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#endif
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//}
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@@ -52,8 +52,8 @@ namespace gfan{
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"dd_free_global_constants()\n"
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"in your deinitialisation code (only available for cddlib version>=094d).\n"
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"This requires the header includes:\n"
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- "#include \"cdd/setoper.h\"\n"
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- "#include \"cdd/cdd.h\"\n"
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+ "#include \"cddlib/setoper.h\"\n"
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+ "#include \"cddlib/cdd.h\"\n"
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"\n"
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"Alternatively, you may call gfan:initializeCddlibIfRequired() and deinitializeCddlibIfRequired()\n"
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"if gfanlib is the only code using cddlib. If at some point cddlib is no longer required by gfanlib\n"
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diff --git a/src/lp_cdd.cpp b/src/lp_cdd.cpp
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index ec36517..5232d50 100644
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--- a/src/lp_cdd.cpp
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+++ b/src/lp_cdd.cpp
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@@ -5,9 +5,9 @@
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#include "cdd.h"
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#include "cdd_f.h"
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#else
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-#include "cdd/setoper.h"
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-#include "cdd/cdd.h"
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-#include "cdd/cdd_f.h"
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+#include "cddlib/setoper.h"
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+#include "cddlib/cdd.h"
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+#include "cddlib/cdd_f.h"
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#endif
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//}
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#include "termorder.h"
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195
srcpkgs/gfan/patches/truncate0008outputs.patch
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195
srcpkgs/gfan/patches/truncate0008outputs.patch
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@ -0,0 +1,195 @@
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diff --git a/testsuite/0008PolynomialSetUnion/command b/testsuite/0008PolynomialSetUnion/command
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index cbb23d6..d61cb71 100644
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--- a/testsuite/0008PolynomialSetUnion/command
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+++ b/testsuite/0008PolynomialSetUnion/command
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@@ -1 +1 @@
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-%s _bases | %s _polynomialsetunion |sort
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+%s _bases | %s _polynomialsetunion |LC_ALL=C sort|tail -n +2 | sed -e '$ d'
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diff --git a/testsuite/0008PolynomialSetUnion/output b/testsuite/0008PolynomialSetUnion/output
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index 38dfb6f..12a65c7 100644
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--- a/testsuite/0008PolynomialSetUnion/output
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+++ b/testsuite/0008PolynomialSetUnion/output
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@@ -1,62 +1,60 @@
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-{
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+a*b-c^6,
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+a*b^2-c^3,
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+a*b^4-b,
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+a*c-b^6,
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+a*c^2-b,
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+a*c^6-c,
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+a-b^11,
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+a-b^2*c,
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+a-c^9,
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a^11-c,
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a^15-a,
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+a^2*b-c,
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a^2*b^3-a,
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+a^2*c-b^3,
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a^2-b^8,
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-a^2*b-c,
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a^2-c^4,
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-a^2*c-b^3,
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-a^3-b^5,
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-a^3-b*c^2,
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a^3*c^2-c}
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-a^4-b^2,
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+a^3-b*c^2,
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+a^3-b^5,
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a^4*c-a,
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+a^4-b^2,
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a^5-c^3,
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a^6*b-a,
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a^6-b*c,
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a^8-c^2,
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a^9-b,
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-a-b^11,
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-a-b^2*c,
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-a*b^2-c^3,
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-a*b^4-b,
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-a*b-c^6,
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-a*c^2-b,
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-a*c^6-c,
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-a-c^9,
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-a*c-b^6,
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+b*c-a^6,
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+b*c^2-a^3,
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+b*c^4-c,
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+b-a*c^2,
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+b-a^9,
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+b-c^11,
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b^11-a,
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b^15-b,
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-b^2-a^4,
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+b^2*c-a,
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b^2*c^3-b,
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+b^2-a^4,
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b^2-c^8,
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-b^2*c-a,
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b^3-a^2*c,
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b^3-c^5,
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b^4-c^2,
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b^5-a^3,
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-b^6-a*c,
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b^6*c-b,
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+b^6-a*c,
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b^8-a^2,
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b^9-c,
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-b-a^9,
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-b-a*c^2,
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-b-c^11,
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-b*c^2-a^3,
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-b*c^4-c,
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-b*c-a^6,
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+c-a^11,
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+c-a^2*b,
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+c-b^9,
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c^11-b,
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c^15-c,
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c^2-a^8,
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c^2-b^4,
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-c^3-a^5,
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c^3-a*b^2,
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+c^3-a^5,
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c^4-a^2,
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c^5-b^3,
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c^6-a*b,
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c^8-b^2,
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c^9-a,
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-c-a^11,
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-c-a^2*b,
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-c-b^9,
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-Q[a,b,c]
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diff --git a/testsuite/0008PolynomialSetUnion/outputNew b/testsuite/0008PolynomialSetUnion/outputNew
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index 38dfb6f..12a65c7 100644
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--- a/testsuite/0008PolynomialSetUnion/outputNew
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+++ b/testsuite/0008PolynomialSetUnion/outputNew
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@@ -1,62 +1,60 @@
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-{
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+a*b-c^6,
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+a*b^2-c^3,
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+a*b^4-b,
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+a*c-b^6,
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+a*c^2-b,
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+a*c^6-c,
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+a-b^11,
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+a-b^2*c,
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+a-c^9,
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a^11-c,
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a^15-a,
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+a^2*b-c,
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a^2*b^3-a,
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+a^2*c-b^3,
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a^2-b^8,
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-a^2*b-c,
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a^2-c^4,
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-a^2*c-b^3,
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-a^3-b^5,
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-a^3-b*c^2,
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a^3*c^2-c}
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-a^4-b^2,
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+a^3-b*c^2,
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+a^3-b^5,
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a^4*c-a,
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+a^4-b^2,
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a^5-c^3,
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a^6*b-a,
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a^6-b*c,
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a^8-c^2,
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a^9-b,
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-a-b^11,
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-a-b^2*c,
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-a*b^2-c^3,
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-a*b^4-b,
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-a*b-c^6,
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-a*c^2-b,
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-a*c^6-c,
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-a-c^9,
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-a*c-b^6,
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+b*c-a^6,
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+b*c^2-a^3,
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+b*c^4-c,
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+b-a*c^2,
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+b-a^9,
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+b-c^11,
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b^11-a,
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b^15-b,
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-b^2-a^4,
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+b^2*c-a,
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b^2*c^3-b,
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+b^2-a^4,
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b^2-c^8,
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-b^2*c-a,
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b^3-a^2*c,
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b^3-c^5,
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b^4-c^2,
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b^5-a^3,
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-b^6-a*c,
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b^6*c-b,
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+b^6-a*c,
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b^8-a^2,
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b^9-c,
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-b-a^9,
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-b-a*c^2,
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-b-c^11,
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-b*c^2-a^3,
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-b*c^4-c,
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-b*c-a^6,
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+c-a^11,
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+c-a^2*b,
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+c-b^9,
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c^11-b,
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c^15-c,
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c^2-a^8,
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c^2-b^4,
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-c^3-a^5,
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c^3-a*b^2,
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+c^3-a^5,
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c^4-a^2,
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c^5-b^3,
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c^6-a*b,
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c^8-b^2,
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c^9-a,
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-c-a^11,
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-c-a^2*b,
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-c-b^9,
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-Q[a,b,c]
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38
srcpkgs/gfan/template
Normal file
38
srcpkgs/gfan/template
Normal file
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@ -0,0 +1,38 @@
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# Template file for 'gfan'
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pkgname=gfan
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version=0.6.2
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revision=1
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wrksrc=gfan$version
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build_style=gnu-makefile
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makedepends="gmp-devel cddlib-devel"
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short_desc="Package for computing Groebner fans and tropical varieties"
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maintainer="Gonzalo Tornaría <tornaria@cmat.edu.uy>"
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license="GPL-2.0-or-later"
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homepage="https://math.au.dk/~jensen/software/gfan/gfan.html"
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distfiles="https://math.au.dk/~jensen/software/gfan/gfan${version}.tar.gz"
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checksum=a674d5e5dc43634397de0d55dd5da3c32bd358d05f72b73a50e62c1a1686f10a
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# Makefile has this but our CFLAGS override it; build fails otherwise
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CFLAGS="-DGMPRATIONAL"
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case $XBPS_TARGET_MACHINE in
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# avoid numerical noise caused by extended-precision of registers
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# fixes testsuite/0009RenderStairCase
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i686*) CFLAGS+=" -ffloat-store" ;;
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esac
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if [ -n "$CROSS_BUILD" ]; then
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# depend on host gfan for installlinks
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hostmakedepends+=" gfan"
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fi
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do_install() {
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if [ -z "$CROSS_BUILD" ]; then
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# Makefile doesn't support DESTDIR so we add it to PREFIX
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make PREFIX=${DESTDIR}/usr install
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else
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vbin gfan
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# use host gfan to install links
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cd ${DESTDIR}/usr/bin && gfan installlinks
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fi
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}
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1
srcpkgs/gfan/update
Normal file
1
srcpkgs/gfan/update
Normal file
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@ -0,0 +1 @@
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ignore=lib*
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Loading…
Reference in a new issue