130 lines
4.7 KiB
Bash
130 lines
4.7 KiB
Bash
|
# Template file for 'sagemath'
|
||
|
|
pkgname=sagemath
|
||
|
|
version=9.5
|
||
|
|
revision=1
|
||
|
|
wrksrc=sage-$version
|
||
|
|
build_wrksrc=pkgs/sagemath-standard
|
||
|
|
build_style=python3-module
|
||
|
|
_bindir=/usr/lib/sagemath/bin
|
||
|
|
make_install_args="--install-scripts=$_bindir"
|
||
|
|
hostmakedepends="m4 pkg-config python3-Cython python3-Jinja2 python3-pkgconfig
|
||
|
|
python3-setuptools"
|
||
|
|
makedepends="arb-devel boost-devel brial-devel cliquer-devel ecl eclib-devel
|
||
|
|
ecm-devel fflas-ffpack flintlib-devel gap-devel gd-devel giac-devel glpk-devel
|
||
|
|
gsl-devel iml-devel lcalc-devel libbraiding-devel libhomfly-devel libmpc-devel
|
||
|
|
libpng-devel linbox-devel lrcalc-devel m4ri-devel m4rie-devel mpfi-devel
|
||
|
|
mpfr-devel ntl-devel openblas-devel pari-devel planarity-devel python3-cypari2
|
||
|
|
python3-cysignals python3-devel python3-gmpy2 python3-memory_allocator
|
||
|
|
python3-numpy rankwidth-devel singular symmetrica-devel zn_poly"
|
||
|
|
depends="FlintQS eclib-devel fflas-ffpack flintlib-devel gcc-fortran gd-devel
|
||
|
|
gfan giac gsl-devel gzip libpng-devel linbox-devel m4ri-devel maxima-ecl
|
||
|
|
mpfr-devel nauty ntl-devel palp pari-devel pari-elldata-small pari-galdata
|
||
|
|
pari-galpol-small pari-seadata-small pkg-config python3-Cython python3-cypari2
|
||
|
|
python3-cysignals python3-devel python3-fpylll python3-ipython
|
||
|
|
python3-ipython_ipykernel python3-jupyter_ipywidgets python3-matplotlib
|
||
|
|
python3-memory_allocator python3-networkx python3-pip python3-pkgconfig
|
||
|
|
python3-pplpy python3-primecountpy python3-requests python3-scipy
|
||
|
|
python3-sympy python3-traitlets sage-data-combinatorial_designs
|
||
|
|
sage-data-conway_polynomials sage-data-elliptic_curves sage-data-graphs
|
||
|
|
sage-data-polytopes_db sympow tachyon"
|
||
|
|
checkdepends="$depends"
|
||
|
|
short_desc="Open source mathematics software"
|
||
|
|
maintainer="Gonzalo Tornaría <tornaria@cmat.edu.uy>"
|
||
|
|
license="GPL-2.0-or-later"
|
||
|
|
homepage="http://sagemath.org/"
|
||
|
|
distfiles="https://github.com/sagemath/sage/archive/refs/tags/$version.tar.gz"
|
||
|
|
checksum=8d70a3b26080802c5b2e33dda4c23795d494d8216a0c2ecfcd608ebab0e64ff6
|
||
|
|
|
||
|
|
post_patch() {
|
||
|
|
# these are unused and nothing else uses ratpoints
|
||
|
|
rm sage/libs/ratpoints.{pyx,pxd}
|
||
|
|
|
||
|
|
# git tree needs bootstrapping
|
||
|
|
pushd $wrksrc/build/pkgs/sagelib
|
||
|
|
PATH=../../bin:$PATH BOOTSTRAP_QUIET=no ./bootstrap
|
||
|
|
popd
|
||
|
|
}
|
||
|
|
|
||
|
|
do_configure() {
|
||
|
|
# set variables in sage.env since we do not install sage_conf
|
||
|
|
cat >> sage/env.py <<-EOF
|
||
|
|
CONWAY_POLYNOMIALS_DATA_DIR = "/usr/share/sagemath/conway_polynomials"
|
||
|
|
GRAPHS_DATA_DIR = "/usr/share/sagemath/graphs"
|
||
|
|
ELLCURVE_DATA_DIR = "/usr/share/sagemath/ellcurves"
|
||
|
|
POLYTOPE_DATA_DIR = "/usr/share/sagemath/reflexive_polytopes"
|
||
|
|
COMBINATORIAL_DESIGN_DATA_DIR = "/usr/share/sagemath/combinatorial_designs"
|
||
|
|
CREMONA_MINI_DATA_DIR = "/usr/share/sagemath/cremona"
|
||
|
|
CREMONA_LARGE_DATA_DIR = "/usr/share/sagemath/cremona"
|
||
|
|
EOF
|
||
|
|
|
||
|
|
# don't install sage-venv-config: it is used to set SAGE_VENV=/usr and
|
||
|
|
# then sage-env prepends "$SAGE_VENV/bin" to PATH which is undesired
|
||
|
|
vsed -e '/sage-venv-config/d' -i $wrksrc/src/setup.cfg
|
||
|
|
}
|
||
|
|
|
||
|
|
pre_build() {
|
||
|
|
export PYTHONPATH=../sage-setup
|
||
|
|
export SAGE_NUM_THREADS="$XBPS_MAKEJOBS"
|
||
|
|
}
|
||
|
|
|
||
|
|
post_build() {
|
||
|
|
_scripts=$(cd build/scripts* && pwd)
|
||
|
|
cat >> $_scripts/sage-env-config <<-'EOF'
|
||
|
|
PATH=$(dirname $SELF):$PATH
|
||
|
|
EOF
|
||
|
|
}
|
||
|
|
|
||
|
|
pre_install() {
|
||
|
|
export PYTHONPATH=../sage-setup
|
||
|
|
export SAGE_NUM_THREADS="$XBPS_MAKEJOBS"
|
||
|
|
}
|
||
|
|
|
||
|
|
post_install() {
|
||
|
|
# fix jupyter kernel spec
|
||
|
|
vsed -i -e 's|"/usr/bin/sage", "--python"|"/usr/bin/python"|' \
|
||
|
|
${DESTDIR}/usr/share/jupyter/kernels/sagemath/kernel.json
|
||
|
|
# replace broken symlinks by good copies (sagemath logo images)
|
||
|
|
for file in $(ls sage/ext_data/notebook-ipython); do
|
||
|
|
rm ${DESTDIR}/usr/share/jupyter/kernels/sagemath/$file
|
||
|
|
cp -a sage/ext_data/notebook-ipython/$file \
|
||
|
|
${DESTDIR}/usr/share/jupyter/kernels/sagemath
|
||
|
|
done
|
||
|
|
# we don't have docs here
|
||
|
|
rm ${DESTDIR}/usr/share/jupyter/kernels/sagemath/doc
|
||
|
|
# we don't have threejs in void
|
||
|
|
rm ${DESTDIR}/usr/share/jupyter/nbextensions/threejs-sage
|
||
|
|
|
||
|
|
# symlink main binary
|
||
|
|
vmkdir usr/bin
|
||
|
|
ln -s $_bindir/sage ${DESTDIR}/usr/bin/sage-${version}
|
||
|
|
ln -s sage-${version} ${DESTDIR}/usr/bin/sage
|
||
|
|
}
|
||
|
|
|
||
|
|
do_check() {
|
||
|
|
_scripts=$(cd build/scripts* && pwd)
|
||
|
|
export PYTHONPATH=$(cd build/lib* && pwd)
|
||
|
|
|
||
|
|
# get out of $build_wrksrc, otherwise python picks the wrong sage module
|
||
|
|
cd $(mktemp -dp build)
|
||
|
|
|
||
|
|
if [ -f ${XBPS_DISTDIR}/sagemath-check ] ; then
|
||
|
|
_sed='s|#.*||;/^\s*$/d;s|[^ ]*/sage/|'$PYTHONPATH'/sage/|g' \
|
||
|
|
_test_files=$(sed -e "$_sed" ${XBPS_DISTDIR}/sagemath-check)
|
||
|
|
fi
|
||
|
|
if [ -z "$_test_files" ]; then
|
||
|
|
_test_files=--all
|
||
|
|
fi
|
||
|
|
cp ${FILESDIR}/timings2.json .
|
||
|
|
_test_args="--stats_path=timings2.json"
|
||
|
|
if [ "$XBPS_CHECK_PKGS" = full ]; then
|
||
|
|
_test_args+=" --long --warn-long 60.0"
|
||
|
|
else
|
||
|
|
_test_args+=" --warn-long 30.0"
|
||
|
|
fi
|
||
|
|
if [ "$XBPS_BUILD_ENVIRONMENT" = "void-packages-ci" ]; then
|
||
|
|
# for CI use a predictable random seed
|
||
|
|
_test_args+=" --random-seed=0"
|
||
|
|
fi
|
||
|
|
$_scripts/sage -tp ${XBPS_MAKEJOBS} ${_test_args} ${_test_files}
|
||
|
|
}
|